Prof. Gur Yaari

2023

• Thomas Konstantinovsky, Gur Yaari, A Novel Approach to T-Cell Receptor Beta Chain (TCRB) Repertoire Encoding Using Lossless String Compression, bioRxiv. 

• William D. Lees, Scott Christley, Ayelet Peres, Justin T. Kos, Brian Corrie, Duncan Ralph, Felix Breden, Lindsay G. Cowell, Gur Yaari, Martin Corcoran, Gunilla B. Karlsson Hedestam, Mats Ohlin, Andrew M. Collins, Corey T. Watson, Christian E. Busse, The AIRR Community, AIRR Community Curation and Standardised Representation for Immunoglobulin and T cell Receptor Germline Sets, Immunoinformatics, article 100025. 

2022

• Aviv Omer*, Ayelet Peres*, Oscar L Rodriguez, Corey T Watson, William Lees, Pazit Polak, Andrew M Collins, Gur Yaari, T Cell Receptor Beta (TRB) Germline Variability is Revealed by Inference From Repertoire Data, Genome Medicine 14:2. 

• Mazor RD, Nathan N, Gilboa A, Stoler-Barak L, Moss L, Solomonov I, Hanuna A, Divinsky Y, Shmueli MD, Hezroni H, Zaretzky I, Mor M, Golani O, Sabah G, Jakobson-Setton A, Yanichkin N, Feinmesser M, Tsoref D, Salman L, Yeoshoua E, Peretz E, Erlich I, Mendelson-Cohen N, Gershoni JM, Freund N, Merbl Y, Yaari G, Eitan R, Sagi I, Shulman Z, Tumor-reactive antibodies evolve from non-binding and autoreactive precursors, Cell, 185(7):1208. 

• Amit Gilboa, Ronen Hope, Shira Ben Simon, Pazit Polak, Omry Koren, Gur Yaari, Ontogeny of the B cell receptor repertoire and microbiome in mice. The Journal of Immunology, DOI:10.4049/jimmunol.2100955. 

• Katherine JL Jackson, Justin T Kos, William Lees, William S Gibson, Melissa Laird Smith, Ayelet Peres, Gur Yaari, Martin Corcoran, Christian E Busse, Mats Ohlin, Corey T Watson, Andrew M Collins, A BALB/c IGHV Reference Set, defined by haplotype analysis of long-read VDJ-C sequences from F1 (BALB/c/C57BL/6) mice, Frontiers in Immunology, doi: 10.3389/fimmu.2022.888555. 

• Gabriel Azhari , Shamam Waldman, Netanel Ofer, Yosi Keller, Shai Carmi, and Gur Yaari, Decomposition of Individual SNP Patterns from Mixed DNA Samples, MDPI, 2:455. 

• Liat Stoler-Barak, Ethan Harris, Ayelet Peres, Hadas Hezroni, Mirela Kuka, Amalie Grenov, Neta Gurwicz, Meital Kupervaser, Bon Ham Yip, Matteo Iannacone, Gur Yaari, John Crispino, Ziv Shulman, B cell class switch recombination is regulated by DYRK1A through MSH6 phosphorylation, Research Square. 

• Modi Safra, Lael Werner, Ayelet Peres, Pazit Polak, Naomi Salamon, Michael Schvimer, Batia Weiss, Iris Barshack, Dror S. Shouval, Gur Yaari, A somatic hypermutation-based machine learning model stratifies individuals with Crohn's disease and controls, Genome Research, doi: 10.1101/gr.276683.122. 

• Modi Safra, Zvi Tamari, Pazit Polak, Shachaf Shiber, Moshe Matan, Hani Karameh, Yigal Helviz, Adva Levy-Barda, Vered Yahalom, Avi Peretz, Eli Ben-Chetrit, Baruch Brenner, Tamir Tuller, Meital Gal-Tanamy, Gur Yaari, Altered somatic hypermutation patterns in COVID-19 patients classifies disease severity, bioRxiv. 

• Ayelet Peres, William D. Lees, Oscar L. Rodriguez, Noah Y. Lee, Pazit Polak, Ronen Hope, Meirav Kedmi, Andrew M. Collins, Mats Ohlin, Steven H. Kleinstein, Corey T Watson, Gur Yaari, IGHV allele similarity clustering improves genotype inference from adaptive immune receptor repertoire sequencing data, bioRxiv. 

2021

• Miri Gordin, Hagit Philip, Alona Zilberberg, Moriah Gidoni, Raanan Margalit, Christopher Clouser, Kristofor Adams, Francois Vigneault, Irun R. Cohen, Gur Yaari, Sol Efroni, Breast cancer is marked by specific, Public T-cell receptor CDR3 regions shared by mice and humans, PLoS Computational Biology, 17(1):e1008486. 

• Kerui Peng, Yana Safonova, Mikhail Shugay, Alice Popejoy, Oscar Rodriguez, Felix Breden, Petter Brodin, Amanda M. Burkhardt, Carlos Bustamante, Van-Mai Cao-Lormeau, Martin M. Corcoran, Darragh Duffy, Macarena Fuentes Guajardo, Ricardo Fujita, Victor Greiff, Vanessa D. Jonsson, Xiao Liu, Lluis Quintana-Murci, Maura Rossetti, Jianming Xie, Gur Yaari, Wei Zhang, William D. Lees, Purvesh Khatri, Houda Alachkar, Cathrine Scheepers, Corey T. Watson, Gunilla B. Karlsson Hedestam, Serghei Mangul, Diversity in immunogenomics: the value and the challenge, Nature Methods 18:588. 

• Or Shemesh, Pazit Polak, Knut E.A. Lundin, Ludvig M. Sollid, Gur Yaari, Machine learning analysis of naïve B-cell receptor repertoires stratifies celiac disease patients and controls, Frontiers in Immunology 12:633. 

• Ivana Mikocziova*, Ayelet Peres*, Moriah Gidoni, Victor Greiff, Gur Yaari*, Ludvig M. Sollid*, Germline polymorphisms and alternative splicing of human immunoglobulin light chain genes, iScience, 24(10):103192. 

• Michael Mor, Michal Werbner, Joel Alter, Modi Safra, Elad Chomsky, Jamie C. Lee, Smadar Hada-Neeman, Ksenia Polonsky, Cameron J. Nowell, Alex E. Clark, Anna Roitburd-Berman, Noam Ben-Shalom, Michal Navon, Dor Rafael, Hila Sharim, Evgeny Kiner, Eric R. Griffis, Jonathan M. Gershoni, Oren Kobiler, Sandra Lawrynowicz Leibel, Oren Zimhony, Aaron F. Carlin, Gur Yaari, Moshe Dessau, Meital Gal-Tanamy, David Hagin, Ben A. Croker, Natalia T. Freund, Multi-clonal SARS-CoV-2 neutralization by antibodies isolated from severe COVID-19 convalescent donors, PLoS pathogens 17(2): e1009165. 

• Milena Pavlović, Lonneke Scheffer, Keshav Motwani, Chakravarthi Kanduri, Radmila Kompova, Nikolay Vazov, Knut Waagan, Fabian L.M. Bernal, Alexandre Almeida Costa, Brian Corrie, Rahmad Akbar, Ghadi S. Al Hajj, Gabriel Balaban, Todd M. Brusko, Maria Chernigovskaya, Scott Christley, Lindsay G. Cowell, Robert Frank, Ivar Grytten, Sveinung Gundersen, Ingrid Hobæk Haff, Sepp Hochreiter, Eivind Hovig, Ping-Han Hsieh, Günter Klambauer, Marieke L. Kuijjer, Christin Lund-Andersen, Antonio Martini, Thomas Minotto, Johan Pensar, Knut Rand, Enrico Riccardi, Philippe A. Robert, Artur Rocha, Andrei Slabodkin, Igor Snapkov, Ludvig M. Sollid, Dmytro Titov, Cédric R. Weber, Michael Widrich, Gur Yaari, Victor Greiff, Geir Kjetil Sandve, immuneML: an ecosystem for machine learning analysis of adaptive immune receptor repertoires, Nature Machine Intelligence, 3:936. 

• Miri Ostrovsky-Berman, Boaz Frankel, Pazit Polak, and Gur Yaari, Immune2vec: embedding B/T cell receptor sequences in R^N using natural language processing, Frontiers in Immunology 12:2706. 

• Shelley Klompus, Sigal Leviatan, Thomas Vogl, Roei D. Mazor, Iris N. Kalka, Liat Stoler-Barak, Nachum Nathan, Ayelet Peres, Lihee Moss, Anastasia Godneva, Sharon Kagan Ben Tikva, Eilat Shinar, Hadas Cohen Dvashi, Ronen Gabizon, Nir London, Ron Diskin, Gur Yaari, Adina Weinberger, Ziv Shulman, Eran Segal, Cross-reactive antibodies against human coronaviruses and the animal coronavirome suggest diagnostics for future zoonotic spillovers, Science Immunology 6(61):eabe9950. 

• Andrew M. Collins, Ayelet Peres, Martin M. Corcoran, Corey T. Watson, Gur Yaari, William D. Lees, Mats Ohlin, Commentary on Population matched (pm) germline allelic variants of immunoglobulin (IG) loci: relevance in infectious diseases and vaccination studies in human populations, Genes & Immunity DOI 10.1038/s41435-021-00152-6. 

• Oz Pirvandy, Moti Fridman, Gur Yaari, Gambling Strategies and Prize Pricing Recommendation in Sports Multi-Bets, Big Data and Cognitive Computing 5(4):70. 

2020

• Netanel Ofer, Orit Shefi, Gur Yaari. Axonal tree morphology and signal propagation dynamics improve neuronal classification, Neuroinformatics, doi: 10.1007/s12021-020-09466-8 

• Itamar Kanter, Gur Yaari*, Tomer Kalisky*, Applications of community detection algorithms to large biological datasets, Deep Sequencing Data Analysis (Part of the Methods in Molecular Biology book series (MIMB, volume 2243)), pp59-80. 

• Aviv Omer, Or Shemesh, Ayelet Peres, Pazit Polak, Adrian J Shepherd, Corey T Watson, Scott D Boyd, Andrew M Collins, William Lees, Gur Yaari, VDJbase: an adaptive immune receptor genotype and haplotype database, Nucleic acids research, gkz872. 

• William Lees, Christian E Busse, Martin Corcoran, Mats Ohlin, Cathrine Scheepers, Frederick A Matsen, Gur Yaari, Corey T Watson, Andrew Collins, Adrian J Shepherd, OGRDB: a reference database of inferred immune receptor genes, Nucleic Acids Research, gkz822. 

• Adi Biram, Eitan Winter, Alice E. Denton, Irina Zaretsky, Bareket Dassa, Mats Bemark, Michelle A. Linterman, Gur Yaari, Ziv Shulman, B Cell Diversification Is Uncoupled from SAP-Mediated Selection Forces in Chronic Germinal Centers within Peyer’s Patches, Cell Reports, 30(6):1916-1922e5. 

• Ivana Mikocziova, Moriah Gidoni, Ida Lindeman, Ayelet Peres, Omri Snir, Gur Yaari, Ludvig M Sollid, Polymorphisms in human immunoglobulin heavy chain variable genes and their upstream regions, Nucleic acids research, 48(10):5499-5510. 

• Andrew M. Collins, Gur Yaari, Adrian J. Shepherd, William Lees, Corey T. Watson, Germline immunoglobulin genes: disease susceptibility genes hidden in plain sight?, Current Opinion in Systems Biology, 24:100. 

• Victor Greiff, Gur Yaari, Lindsay Cowell, Mining adaptive immune receptor repertoires for biological and clinical information using machine learning, Current Opinion in Systems Biology, 24:109. 

2019

• Pazit Polak, Ramit Mehr, and Gur Yaari, Immunoglobulin Clonotype and Ontogeny Inference, Encyclopedia of Bioinformatics and Computational Biology, 2:972. 

• Moriah Gidoni, Omri Snir, Ayelet Peres, Pazit Polak, Ida Lindeman, Ivana Mikocziova, Vikas Sarna, Knut Lundin, Christopher Clouser, Francois Vigneault, Andrew Collins, Ludvig Sollid, and Gur Yaari, Mosaic deletion patterns of the human antibody heavy chain gene locus revealed by Bayesian haplotyping, Nature Communications, 10: Article number: 628. 

• Daniel Gadala-Maria, Moriah Gidoni, Susanna Marquez, Jason Anthony Vanderheiden, Justin T Kos, Corey Watson, Kevin C O'Connor, Gur Yaari, Steven H Kleinstein. Identification of subject-specific immunoglobulin alleles from expressed repertoire sequencing data, Frontiers in Immunology, doi: 10.3389/fimmu.2019.00129. 

• Ronit Rosenfeld, Anat Zvi, Eitan Winter, Ronen Hope, Ofir Israeli, Ohad Mazor, Gur Yaari. A primer set for comprehensive amplification of V-genes from rhesus macaque origin based on repertoire sequencing, Journal of Immunological Methods, 465:67. 

• Adi Biram, Anneli Strömberg, Eitan Winter, Liat Stoler-Barak, Ran Salomon, Yoseph Addadi, Rony Dahan, Gur Yaari, Mats Bemark, Ziv Shulman, BCR affinity differentially regulates colonization of the subepithelial dome and infiltration into germinal centers within Peyer’s patches, Nature Immunology, 20 (4), 482. 

• Ayelet Peres, Moriah Gidoni, Pazit Polak, Gur Yaari, RAbHIT: R Antibody Haplotype Inference Tool, Bioinformatics, btz481, https://doi.org/10.1093/bioinformatics/btz481 

• Shira Perez, Antony Kaspi, Tom Domovitz, Ateret Davidovich, Anat Lavi-Itzkovitz, Tomer Meirson, Jacinta Alison Holmes, Chia-Yen Dai, Chung-Feng Huang, Raymond T. Chung, Assy Nimer, Assam El-Osta, Gur Yaari, Salomon M. Stemmer, Ming-Lung Yu, Izhak Haviv, Meital Gal-Tanamy, Hepatitis C virus leaves an epigenetic signature post cure of infection by direct-acting antivirals, PLoS genetics, 15 (6), e1008181. 

• Mats Ohlin, Cathrine Scheepers, Martin Corcoran, William D. Lees, Christian E. Busse, Davide Bagnara, Linnea Thörnqvist, Jean-Philippe Bürckert, Katherine J. L. Jackson, Duncan Ralph, Chaim A. Schramm, Nishanth Marthandan, Felix Breden, Jamie Scott, Frederick A. Matsen IV, Victor Greiff, Gur Yaari, Steven H. Kleinstein, Scott Christley, Jacob S. Sherkow, Sofia Kossida, Marie-Paule Lefranc, Menno C. van Zelm, Corey T. Watson, Andrew M. Collins, Inferred Allelic Variants of Immunoglobulin Receptor Genes: A System for Their Evaluation, Documentation, and Naming, Frontiers in immunology, 10, 435. 

• Hailong Meng, Gur Yaari, Christopher R. Bolen, Stefan Avey, Steven H. Kleinstein, Gene set meta-analysis with Quantitative Set Analysis for Gene Expression (QuSAGE), PLoS computational biology, 15 (4), e1006899. 

• Benny Chain, Victor Greiff, Johannes Textor, Gur Yaari, Editorial: Methods and Applications of Computational Immunology, Frontiers in immunology 10:2818 

2018

• Gur Yaari, Martin Flajnik, Uri Hershberg. Questions of Stochasticity and Control in Immune Repertoires, Trends in immunology, 39 (11): 859. 

• John Stins, Gur Yaari, Kevin Wijmer, Joost Burger, Peter Jan Beek. Evidence for Sequential Performance Effects in Professional Darts, Frontiers in psychology 9:591. 

• Sivan Eliyahu, Oz Sharabi, Shiri Elmedvi, Reut Timor, Ateret Davidovich, Francois Vigneault, Chris Clouser, Ronen Hope, Assy Nimer, Marius Braun, Yaacov Weiss, Pazit Polak, Gur Yaari* and Meital Gal Tanamy*. Antibody repertoire analysis of Hepatitis C virus infections identifies immune signatures associated with spontaneous clearance, Frontiers in Immunology, 9, 3004. 

2017

• Ofer Alper, Anelia Somekh-Baruch, Oz Pirvandy, Malka Schaps, and Gur Yaari, Effects of correlations and fees in random multiplicative environments: Implications for portfolio management, Physical Review E, 96: 022305. 

• Omri Snir*, Xi Chen*, Moriah Gidoni*, M. Fleur du Pre, Yuguang Zhao, Øyvind
  Steinsbø, Knut E. A. Lundin, Gur Yaari*, and Ludvig M. Sollid*, Stereotyped antibody responses target post-translationally modified gluten in celiac disease, JCI Insight, 2(17): e93961. 

• Netanel Ofer, Orit Shefi*, and Gur Yaari*, Branching morphology determines signal propagation dynamics in neurons, Scientific Reports 7, Article number: 8877. 

• Rinat Meir, Katerina Shamalov, Tamar Sadan, Menachem Motiei, Gur Yaari, Cyrille J. Cohen, and Rachela Popovtzer, Fast Image-Guided Stratification Using Anti-Programmed Death Ligand 1 Gold Nanoparticles for Cancer Immunotherapy, ACS Nano, doi: 10.1021/acsnano.7b05299. 

2016

• R Di Niro, O Snir, K Kaukinen, G Yaari, KEA Lundin, NT Gupta, SH Kleinstein, M Cols, A Cerutti, M Mäki, MJ Shlomchik, LM Sollid, Responsive population dynamics and wide seeding into the duodenal lamina propria of transglutaminase-2-specific plasma cells in celiac disease, Mucosal Immunology, 9, 254–264. 

• Ruxandra Covacu, Hagit Philip, Merja Jaronen, Jorge Almeida, Jessica E. Kenison, Samuel Darko, Chun-Cheih Chao, Gur Yaari, Yoram Louzoun, Liran Carmel, Daniel C. Douek, Sol Efroni, and Francisco J. Quintana, System-wide Analysis of the T Cell Response, Cell Reports, doi: 10.1016/j.celrep.2016.02.056. 

• Dror Hibsh, Kenneth H. Buetow, Gur Yaari, and Sol Efroni, Quantification of read species behavior within whole genome sequencing of cancer genomes for the stratification and visualization of genomic variation, Nucleic Acids Research, doi:10.1093/nar/gkw031. 

2015

• Gur Yaari and Steven H. Kleinstein, Practical guidelines for B-cell receptor repertoire sequencing analysis, Genome Medicine, 7:121. 

• Gur Yaari, Jennifer Benichou, Jason Vander Heiden, Steven H. Kleinstein and Yoram Louzoun, The mutation patterns in B-cell immunoglobulin receptors reflect the influence of selection acting at multiple time-scales, Philosophical Transactions B, 370: 20140242. 

• Namita T. Gupta, Jason Vander Heiden, Mohamed Uduman, Daniel Gadala-Maria, Gur Yaari, and Steven H. Kleinstein, Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data, Bioinformatics, doi:10.1093/bioinformatics/btv359. 

• Omri Snir, Luka Mesin, Moriah Gidoni, Knut E. A. Lundin, Gur Yaari*, and Ludvig M. Sollid*, Analysis of Celiac Disease Autoreactive Gut Plasma Cells and Their Corresponding Memory Compartment in Peripheral Blood Using High-Throughput Sequencing, The Journal of Immunology, 194(12), 5703-5712. 

• Yuval R. Zelnik, Sorin Solomon, and Gur Yaari Species survival emerge from rare events of individual migration, Scientific Reports 5, Article number:7877 doi:10.1038/srep07877. 

• Daniel Gadala-Maria, Gur Yaari, Mohamed Uduman, and Steven H. Kleinstein, Automated analysis of high-throughput B cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment alleles, Proceedings of the National Academy of Sciences, 112(8), E862–E870. 

2014

• Joel N. H. Stern*, Gur Yaari*, Jason A. Vander Heiden*, George Church, William F. Donahue, Rogier Q. Hintzen, Anita J. Huttner, Jon D. Laman, Rashed M. Nagra, Alyssa Nylander, David Pitt, Sriram Ramanan, Bilal A. Siddiqui, Francois Vigneault, Steven H. Kleinstein, David A. Hafler and Kevin C. O’Connor. Antibody repertoire sequencing demonstrates that B cells populating the multiple sclerosis brain mature in the draining cervical lymph nodes, Science Translational Medicine 6, 248ra107. 

• Uri Laserson, Francois Vigneault, Daniel Gadala-Maria, Gur Yaari, Mohamed Uduman, Jason A. Vander Heiden, William Kelton, Sang Taek Jung, Yi Liu, Jonathan Laserson, Raj Chari, Je-Hyuk Lee, Ido Bachelet, Brendan Hickey, Erez Lieberman-Aiden, Bozena Hanczaruk, Birgitte B. Simen, Michael Egholm, Daphne Koller, George Georgiou, Steven H. Kleinstein and George M. Church, High-resolution antibody dynamics of vaccine-induced immune responses, Proceedings of the National Academy of Sciences. 111(13):4928. 

• Jason A. Vander Heiden*, Gur Yaari*, Mohamed Uduman, Joel N.H. Stern, Kevin C. O’Connor, David A. Hafler, Francois Vigneault and Steven H. Kleinstein. pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires, Bioinformatics doi:10.1093/bioinformatics/btu138. 

2013

• Devin Sok, Uri Laserson, Jonathan Laserson, Yi Liu, Francois Vigneault, Jean-Philippe Julien, Bryan Briney, Alejandra Ramos, Karen F. Saye, Khoa Le, Alison Mahan, Shenshen Wang, Mehran Kardar, Gur Yaari, Laura M. Walker, Birgitte B. Simen, Elizabeth P. St. John, Po-Ying Chan-Hui, Kristine Swiderek, Steven H. Kleinstein, Galit Alter, Michael S. Seaman, Arup K. Chakraborty, Daphne Koller, Ian A. Wilson, George M. Church, Dennis R. Burton and Pascal Poignard. The Effects of Somatic Hypermutation on Neutralization and Binding in the PGT121 Family of Broadly Neutralizing HIV Antibodies, PLoS Pathogens 9(11): e1003754. 

• Gur Yaari, Jason Vander Heiden, Mohamed Uduman, Daniel Gadala-Maria, Namita Gupta, Joel N.H. Stern, Kevin O’Connor, David Hafler, Uri Laserson, Francois Vigneault and Steven Kleinstein. Models of somatic hypermutation targeting and substitution based on synonymous mutations from high-throughput Immunoglobulin sequencing data, Frontiers in Immunology, 4(358). 

• Gur Yaari, Christopher R. Bolen, Juillee Thakar and Steven H. Kleinstein, Quantitative Set Analysis for Gene Expression: A method to quantify gene set differential expression including gene-gene correlations, Nucleic Acids Research, 41(18): e170. 

• • Liangjuan Fang, Daniel E. Lowther, Matt L. Meizlish, Jae-Yun Lee, Joel N.H. Stern, Richard C.E. Anderson, Jeffrey N. Bruce, Anita J. Huttner, Gur Yaari, Steven H. Kleinstein, Lesley Devine, Katharine M. Cronk, Laura Lovato and Kevin C. O’Connor, The immune cell infiltrate populating meningiomas is comprised of mature, antigen-experienced T and B cells, Neuro-Oncology, 15(11): 1479. 

• Luis Querol, Pamela L. Clark, Anne H. Cross, Jae-Yun Lee, Steven H. Kleinstein, Gur Yaari, David A. Hafler, Simon N. Willis and Kevin C. OConnor , Protein array-based autoantibody profiling of cerebrospinal fluid from patients with multiple sclerosis, Neurology , 81(11): 956. 

• Jamie L. Duke, Man Liu, Gur Yaari, Ashraf M. Khalil, Mary M. Tomayko, Mark J. Shlomchik, David G. Schatz and Steven H. Kleinstein, Multiple Transcription Factor Binding Sites Predict AID Targeting in Non-Ig Genes,The Journal of Immunology, 190(8): 3878. 

2012

• Gur Yaari, Mohamed Uduman and Steven H. Kleinstein,Quantifying selection in high-throughput Immunoglobulin sequencing datasets, Nucleic Acids Research, 40(17): e134. 

• Gur Yaari and Gil David, "Hot hand" on strike: Bowling data show correlation to recent past results, not causality, PLoS ONE, 7(1): e30112. 

• Gur Yaari ,Yossi Ben-Zion, Nadav M. Shnerb and David A. Vasseur, Consistent scaling of persistence time in metapopulations, Ecology, 93: 1214. 

2011

• Gur Yaari and Shmuel Eisenmann,The Hot (invisible?) Hand: can time sequence patterns of success/failure in sports be modeled as repeated random independent trials? PLoS ONE, 6(10): e24532. 

• Mohamed Uduman*, Gur Yaari*, Uri Hershberg, Mark J. Shlomchik and Steven H. Kleinstein, Detecting selection in Immunoglobulin sequences, Nucleic Acids Research, 39: 499. 

• Steven M. Kerfoot, Gur Yaari, Jaymin R. Patel, Kody L. Johnson, David G. Gonzalez, Steven H. Kleinstein and Ann M. Haberman, Inter-follicular germinal center B cell and T follicular helper cell development precedes follicular Tfh maintenance, Immunity, 34(6): 947. 

• Yosi Maruvka, Gur Yaari, Sorin Solomon, David Kessler and Nadav Shnerb, Slicing and Dicing the Genome: A Statistical Physics Approach to Population Genetics, Journal of Statistical Physics, 142(6): 1302. 

2010

• Gur Yaari and Sorin Solomon, Cooperation Evolution in Random Multiplicative Environments, European Physical Journal B, 73(4): 625. 

• Yosi Ben Zion, Gur Yaari and Nadav Shnerb, Optimizing metapopulation sustainability through a checkerboard strategy, PLoS Computational Biology, 6(1): e1000643. 

2009

• Yaniv Dover, Sonia Moulet, Sorin Solomon and Gur Yaari, Do all economies grow equally fast? Risk and Decision Analysis, 1(3): 171. 

• Damien Challet and Sorin Solomon and Gur Yaari, The Universal Shape of Economic Recession and Recovery after a Shock, Economics: The Open-Access, Open-Assessment E-Journal, 3(36): 1. 

2008

• Gur Yaari, Andrzej Nowak, Kamil Rakocy and Sorin Solomon, Microscopic Study Reveals the Singular Origins of Economic Growth, European Physical Journal B, 62:505. 

• Gur Yaari, Sorin Solomon, Marcelo Schiffer and Nadav M. Shnerb, Local enrichment and its nonlocal consequences for victim-exploiter meta populations, Physica D, 237(20): 2553. 

• Gur Yaari, Dietrich Stauffer and Sorin Solomon,Intermittency and Localization, Encyclopedia of Complexity and System Science, 9: 4920, Springer New York. 

2006

• Gur Yaari, Sorin Solomon and Christophe Deissenberg, Advertising, Negative Word-of-Mouth, and Product Acceptance, European Journal of Economic and Social Systems, 19(2): 257. 

2005

• Friedman, E., Bauer, M., Breitschopf, J., Clement, H., Denz, H., Doroshkevich, E., Erhardt, A., Hofman, G. J., Kritchman, S., Meier, R., Wagner, G. J. and Yaari, G., Elastic scattering of low energy pions by nuclei and the in-medium isovector pi N amplitude, Physical Review C, 72(3): 034609. 

2004

• Friedman, E., Bauer, M., Breitschopf, J., Clement, H., Denz, H., Doroshkevich, E., Erhardt, A., Hofman, G. J., Meier, R., Wagner, G. J. and Yaari, G., The in-medium isovector pi N amplitude from low energy pion scattering, Physical Review Letters, 93(12): 122302. 

• energy pion scattering, Physical Review Letters, 93(12): 122302.